PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009804996.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 194aa    MW: 22140.7 Da    PI: 6.1403
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009804996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF26.21e-082468347
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    ie +  r+ tfskRr g+ KK + L    +a++ +i+ s++g+l+
  XP_009804996.1 24 IEREDHRYATFSKRRSGLYKKTSKLVRESGADIGIILSSPSGNLF 68
                    888999************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.171474IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-91473IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-151485IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-71636IPR002100Transcription factor, MADS-box
PfamPF003195.9E-132369IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-73651IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-75172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MKEEEEKTAE KKTAGRQKVP LVKIEREDHR YATFSKRRSG LYKKTSKLVR ESGADIGIIL  60
SSPSGNLFSL FHPTSNIVLD RFENPNIELD YTTQLVAAYL HNKVNQSCDR LKEFKTREKI  120
ASQQMILFDQ LNETRQIDQQ EYIDQLNADD ITKYEVWLNG IIFGLDNHLK QLENGASSSS  180
QVPPENADNS SSSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804996.11e-143PREDICTED: MADS-box transcription factor 31-like
TrEMBLM1DEL83e-64M1DEL8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000878131e-63(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-22AGAMOUS-like 61